# Burrows Wheeler Algorithm Assignment Help

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## What is burrows wheeler Algorithm?

1) The burrows and wheeler transform (BWT) is a block sorting lossless and reversible data transform.

2) The transformed text can be better compressed with fast locally adaptive algorithms, such as run length encoding in combination with Huffman coding.

 bwtrew(o, [m..n], p)list <- get_Intervals([m..n])while list not empty do[lb..rb] <- head(list)if lb = rb or S[SA[lb] + l + 1] =  S[SA[rb] + l + 1] thenpos <- SA[lb] + l + 1if lb = rb thenif pos > n  thenpos <- (pos - n)SApower rev[k] <- (n - pos + 1) c <- S[pos]for q <- o to (o + rb - lb) doBWT power rev [q] <- ccount[c] <- count[c] + 1LF power rev [q] <- count[c]elsebwtrev (o, [lb..rb], p+1)o <- (o + rb - lb + 1)if list not empty thenLCP power rev [o] <- l

Reversible permutation used originally in compression:

 \$ b d b b   d h \$ b d b b d h b b d h   \$ b d b b d h \$ b d b d b b   d h \$ b d b b d h \$ b d b b d h \$ b d h \$ b d b b d h \$ b d b h d \$ b b b d T d b b d   h \$ b d b b d h \$ b BWT(T) d h \$ b d b b d h \$ b d b b h \$ b d b b   d h \$ b d b b d Burrows wheeler matrix Last column

### Inversing Burrows – Wheeler transform

 B M M C \$ B B B \$ C B O B O \$ C B O B O B O B \$ C B O B B \$ C B O B O O B O B \$ C B SORT B O B \$ C B O C B O B O B \$ B O B O B \$ C \$ C B O B O B C B O B O B \$ B O B \$ C B O O B \$ C B O B B O B O B \$ C O B O B \$ C B

### Example: sort the given sequence

 I P N P M P H . V T \$ P N P M P H . V T \$ I N P M P H . V T \$ I P P M P H . V T \$ I P N M P H . V T \$ I P N P P H . V T \$ I P N P M H . V T \$ I P N P M P . V T \$ I P N P M P H V T \$ I P N P M P H . T \$ I P N P M P H . V \$ I P N P M P H . V T