Burrows Wheeler Algorithm Assignment Help

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What is burrows wheeler Algorithm?

1) The burrows and wheeler transform (BWT) is a block sorting lossless and reversible data transform.

2) The transformed text can be better compressed with fast locally adaptive algorithms, such as run length encoding in combination with Huffman coding.

bwtrew(o, [m..n], p)
list <- get_Intervals([m..n])
while list not empty do
[lb..rb] <- head(list)
if lb = rb or S[SA[lb] + l + 1] = S[SA[rb] + l + 1] then
pos <- SA[lb] + l + 1
if lb = rb then
if pos > n then
pos <- (pos - n)
SApower rev[k] <- (n - pos + 1)
c <- S[pos]
for q <- o to (o + rb - lb) do
BWT power rev [q] <- c
count[c] <- count[c] + 1
LF power rev [q] <- count[c]
else
bwtrev (o, [lb..rb], p+1)
o <- (o + rb - lb + 1)
if list not empty then
LCP power rev [o] <- l

Reversible permutation used originally in compression:

	$ b d b b d h	$ b d b b d h
	b b d h $ b d	b b d h $ b d
	b d b b d h $	b d b b d h $
b d b b d h $	b d h $ b d b	b d h $ b d b	h d $ b b b d
T	d b b d h $ b	d b b d h $ b	BWT(T)
	d h $ b d b b	d h $ b d b b
	h $ b d b b d	h $ b d b b d
	Burrows wheeler matrix	Last column

Inversing Burrows – Wheeler transform

B M M C $ B B

SORT

Example: sort the given sequence

I	P	N	P	M	P	H	.	V	T	$
P	N	P	M	P	H	.	V	T	$	I
N	P	M	P	H	.	V	T	$	I	P
P	M	P	H	.	V	T	$	I	P	N
M	P	H	.	V	T	$	I	P	N	P
P	H	.	V	T	$	I	P	N	P	M
H	.	V	T	$	I	P	N	P	M	P
.	V	T	$	I	P	N	P	M	P	H
V	T	$	I	P	N	P	M	P	H	.
T	$	I	P	N	P	M	P	H	.	V
$	I	P	N	P	M	P	H	.	V	T

Answer: the sorted list -

$	I	P	N	P	M	P	H	.	V	T
.	V	T	$	I	P	N	P	M	P	H
H	.	V	T	$	I	P	N	P	M	P
I	P	N	P	M	P	H	.	V	T	$
M	P	H	.	V	T	$	I	P	N	P
N	P	M	P	H	.	V	T	$	I	P
P	H	.	V	T	$	I	P	N	P	M
P	M	P	H	.	V	T	$	I	P	N
P	N	P	M	P	H	.	V	T	$	I
T	$	I	P	N	P	M	P	H	.	V
V	T	$	I	P	N	P	M	P	H	.

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